PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_61090_iso_1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family ERF
Protein Properties Length: 130aa    MW: 14799.3 Da    PI: 5.2266
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_61090_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2254.9e-084302955
                                  AP2 29 krfslgkfgtaeeAakaaiaarkkleg 55
                                         +r++lg+f+ta +Aa  +++a+ +l+g
  cra_locus_61090_iso_1_len_524_ver_3  4 TRIWLGTFDTAIDAAMSYDRAAFRLRG 30
                                         89***********************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103213.459138IPR001471AP2/ERF domain
SMARTSM003801.1E-8144IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.7E-16239IPR001471AP2/ERF domain
CDDcd000181.08E-17238No hitNo description
SuperFamilySSF541711.7E-11240IPR016177DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 130 aa     Download sequence    Send to blast
XKGTRIWLGT FDTAIDAAMS YDRAAFRLRG SKAILNFPLE VSNFKQENHE IEENINLNLS  60
SCGKRVREVD DKDEVVVKKE VKREQMVATP LTPSSWSAIW DCEYGNGIFE VPPLSPHPSF  120
VYSQLLVSXW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-163432868ATERF1
3gcc_A5e-163432868ATERF1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001306589.13e-68ethylene-responsive transcription factor 5
SwissprotQ404781e-51ERF5_TOBAC; Ethylene-responsive transcription factor 5
TrEMBLQ9FR332e-69Q9FR33_SOLLC; Ripening regulated protein DDTFR10/A (Fragment)
STRINGSolyc05g052040.1.18e-67(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9632389